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Current Perspective| Volume 179, P136-146, January 2023

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Testing for homologous recombination repair or homologous recombination deficiency for poly (ADP-ribose) polymerase inhibitors: A current perspective

Open AccessPublished:December 21, 2022DOI:https://doi.org/10.1016/j.ejca.2022.10.021

      Highlights

      • Several biomarker tests are available to determine patient selection for PARPis.
      • These tests identify tumours with HRD and help determine sensitivity to PARPis.
      • We reviewed biomarker tests to assess HRD and their relevance for PARPi treatment.

      Abstract

      Poly (ADP-ribose) polymerase inhibitors (PARPis) have demonstrated clinical activity in patients with BRCA1 and/or BRCA2 mutated breast, ovarian, prostate, and pancreatic cancers. Notably, BRCA mutations are associated with defects in the homologous recombination repair (HRR) pathway. This homologous recombination deficiency (HRD) phenotype can also be observed as genomic instability in tumour cells. Accordingly, PARPi sensitivity has been observed in various tumours with HRD, independent of BRCA mutations. Currently, four PARPis are approved by regulatory agencies for the treatment of cancer across multiple tumour types. Most indications are specific to tumours with a confirmed BRCA mutation, mutations in other HRR-related genes, HRD evidenced by genomic instability, or evidence of platinum sensitivity. Regulatory agencies have also approved companion and complementary diagnostics to facilitate patient selection for each PARPi indication. This review aims to summarise the biological basis, clinical validation, and clinical relevance of the available diagnostic methods and assays to assess HRD.

      Keywords

      1. Introduction

      Genome stability is essential to life, and the cell has evolved multiple DNA damage response (DDR) pathways to detect and repair DNA damage [
      • Lord C.J.
      • Ashworth A.
      The DNA damage response and cancer therapy.
      ,
      • Jiang M.
      • Jia K.
      • Wang L.
      • Li W.
      • Chen B.
      • Liu Y.
      • et al.
      Alterations of DNA damage repair in cancer: from mechanisms to applications.
      ]. Defects in these pathways can lead to mutations, genomic instability, cell death and tumourigenesis [
      • Lord C.J.
      • Ashworth A.
      The DNA damage response and cancer therapy.
      ,
      • Jiang M.
      • Jia K.
      • Wang L.
      • Li W.
      • Chen B.
      • Liu Y.
      • et al.
      Alterations of DNA damage repair in cancer: from mechanisms to applications.
      ]. Poly (ADP-ribose) polymerases (PARPs) play an essential role in DDR pathways and represent a target for anticancer therapy [
      • Lord C.J.
      • Ashworth A.
      The DNA damage response and cancer therapy.
      ,
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ]. In the past decade, PARP inhibitors (PARPis) have emerged as a new class of anticancer drugs in multiple cancers, including ovarian (niraparib, olaparib and rucaparib), metastatic castration-resistant prostate (mCRPC; olaparib and rucaparib), breast (olaparib and talazoparib) and metastatic pancreatic (olaparib) [
      Glaxo Smithkline
      ZEJULA (niraparib) capsules, for oral use.
      ,
      AstraZeneca Pharmaceuticals LP
      LYNPARZA® (olaparib) tablets, for oral use.
      ,
      Clovis Oncology I
      RUBRACA® (rucaparib) tablets, for oral use.
      ,
      Pfizer Labs I
      TALZENNA- talazoparib capsule.
      ,
      Limited GI
      Zejula 100 mg hard capsules (SPC).
      ,
      AB A
      Lynparza 100 mg film-coated tablets (SPC) Lynparza 150 mg film-coated tablets (SPC).
      ,
      Ltd COI
      Rubraca 200 mg film-coated tablets (SPC) Rubraca 250 mg film-coated tablets (SPC) Rubraca 300 mg film-coated tablets (SPC).
      ,
      EEIG PEM
      Talzenna 0.25 mg hard capsules (SPC) Talzenna 1 mg hard capsules (SPC).
      ]. Predicting benefit from PARPis is critical for optimal clinical use, and several biomarker tests are available to determine patient selection for PARPis across treatment settings, with more tests in development [
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ]. These tests identify tumours with defects in DNA repair pathways, most specifically the homologous recombination repair (HRR) pathway, which make them vulnerable to PARPis. Choice of the appropriate biomarker test depends on tumour type and may even differ by line of therapy for the same tumour type, thereby presenting challenges for the clinician. This review aims to enhance the understanding of different biomarker tests to assess homologous recombination deficiency (HRD) and their relevance for PARPi treatment selection in different tumour types.

      2. HRD in cancer

      Numerous genes have been implicated in the HRR pathway, including those encoding sensor proteins involved in DSB detection (i.e. γH2AX, ATM and ATR), signal mediator proteins (i.e. BRCA1, BRCA2 and PALB2), and an effector protein (RAD51) that promotes strand invasion and replication fork stabilisation (Fig. 1) [
      • Pellegrino B.
      • Mateo J.
      • Serra V.
      • Balmaña J.
      Controversies in oncology: are genomic tests quantifying homologous recombination repair deficiency (HRD) useful for treatment decision making?.
      ]. The best-characterised HRR genes in relation to cancer are BRCA1 and BRCA2, which have been associated with breast, ovarian, pancreatic and prostate cancers [
      • Mersch J.
      • Jackson M.A.
      • Park M.
      • Nebgen D.
      • Peterson S.K.
      • Singletary C.
      • et al.
      Cancers associated with BRCA1 and BRCA2 mutations other than breast and ovarian.
      ].
      Fig. 1
      Fig. 1Measuring HRD. (A) The identification of mutations in BRCA and other HRR-related genes and detecting genomic instability are two principal ways to detect HRD. (B) Notably, LOH, TAI and LST are all measures of genomic instability. Abbreviations: HRD, homologous recombination deficiency; HRR, homologous recombination repair; LOH, loss of heterozygosity; LST, large-scale state transitions; TAI, telomeric allelic imbalance.
      HRD is characterised by an inability to repair DNA DSBs through the HRR pathway. Causes of HRD are not always known but include loss-of-function mutations and epigenetic modifications in HRR-related genes, particularly BRCA1 and/or BRCA2 [
      • Konstantinopoulos P.A.
      • Ceccaldi R.
      • Shapiro G.I.
      • D'Andrea A.D.
      Homologous recombination deficiency: exploiting the fundamental vulnerability of ovarian cancer.
      ]. HRD typically results in accumulation of genomic damage, which may lead to mitotic catastrophe and cell death as well as carcinogenesis [
      • Castedo M.
      • Perfettini J.L.
      • Roumier T.
      • Andreau K.
      • Medema R.
      • Kroemer G.
      Cell death by mitotic catastrophe: a molecular definition.
      ]. Consequently, cancer cells can demonstrate genomic instability [
      • Frey M.K.
      • Pothuri B.
      Homologous recombination deficiency (HRD) testing in ovarian cancer clinical practice: a review of the literature.
      ,
      • Abkevich V.
      • Timms K.M.
      • Hennessy B.T.
      • Potter J.
      • Carey M.S.
      • Meyer L.A.
      • et al.
      Patterns of genomic loss of heterozygosity predict homologous recombination repair defects in epithelial ovarian cancer.
      ], which may manifest as loss of heterozygosity (LOH; existence of a single allele resulting from a cross-chromosomal event that leads to the loss of entire genes and the surrounding chromosomal region [
      • Abkevich V.
      • Timms K.M.
      • Hennessy B.T.
      • Potter J.
      • Carey M.S.
      • Meyer L.A.
      • et al.
      Patterns of genomic loss of heterozygosity predict homologous recombination repair defects in epithelial ovarian cancer.
      ]); telomeric allelic imbalance (TAI; a discrepancy in the 1:1 allele ratio in the telomere of the chromosome owing to reciprocal translocations [
      • Birkbak N.J.
      • Wang Z.C.
      • Kim J.Y.
      • Eklund A.C.
      • Li Q.
      • Tian R.
      • et al.
      Telomeric allelic imbalance indicates defective DNA repair and sensitivity to DNA-damaging agents.
      ]); and large-scale state transitions (LST; chromosomal breaks between adjacent regions of at least 10 Mb [
      • Popova T.
      • Manié E.
      • Rieunier G.
      • Caux-Moncoutier V.
      • Tirapo C.
      • Dubois T.
      • et al.
      Ploidy and large-scale genomic instability consistently identify basal-like breast carcinomas with BRCA1/2 inactivation.
      ]).

      3. PARPi: indications

      In 2014, olaparib became the first PARPi approved by the US Food and Drug Administration (FDA) specifically for treating germline BRCA-mutated metastatic ovarian cancer after ≥3 lines of chemotherapy [
      • Kim G.
      • Ison G.
      • McKee A.E.
      • Zhang H.
      • Tang S.
      • Gwise T.
      • et al.
      FDA approval summary: olaparib monotherapy in patients with deleterious germline BRCA-mutated advanced ovarian cancer treated with three or more lines of chemotherapy.
      ]. Currently, four PARPis (olaparib, rucaparib, talazoparib and niraparib) are approved by regulatory agencies for the treatment of multiple tumour types. Most indications are specific to tumours with a confirmed BRCA mutation, other HRR mutation, or HRD genomic instability (Supplementary Table 1), but PARPi therapy is also broadly indicated for patients with platinum-sensitive disease relapse [
      Glaxo Smithkline
      ZEJULA (niraparib) capsules, for oral use.
      ,
      AstraZeneca Pharmaceuticals LP
      LYNPARZA® (olaparib) tablets, for oral use.
      ,
      Clovis Oncology I
      RUBRACA® (rucaparib) tablets, for oral use.
      ,
      Pfizer Labs I
      TALZENNA- talazoparib capsule.
      ,
      Limited GI
      Zejula 100 mg hard capsules (SPC).
      ,
      AB A
      Lynparza 100 mg film-coated tablets (SPC) Lynparza 150 mg film-coated tablets (SPC).
      ,
      Ltd COI
      Rubraca 200 mg film-coated tablets (SPC) Rubraca 250 mg film-coated tablets (SPC) Rubraca 300 mg film-coated tablets (SPC).
      ]. Four companion diagnostics are approved in conjunction with the drug approvals to facilitate patient selection.

      4. Biomarker tests for PARPi

      PARPi sensitivity has been well established for tumours that harbour BRCA mutations [
      • Mateo J.
      • Lord C.J.
      • Serra V.
      • Tutt A.
      • Balmaña J.
      • Castroviejo-Bermejo M.
      • et al.
      A decade of clinical development of PARP inhibitors in perspective.
      ]. The prevalence of BRCA mutations have been reported to range from 1% to 15% (BRCA1) and 2%–6% (BRCA2) in advanced/metastatic breast cancer, 12%–15% (BRCA1) and 5%–7% (BRCA2) in ovarian cancer, 0.3%–1% (BRCA1) and 5%–6% (BRCA2) in metastatic prostate cancer and 0.3%–2.3% (BRCA1) and 0.7%–5.7% (BRCA2) in pancreatic cancer [
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ,
      • Armstrong N.
      • Ryder S.
      • Forbes C.
      • Ross J.
      • Quek R.G.
      A systematic review of the international prevalence of BRCA mutation in breast cancer.
      ,
      • Doan D.K.
      • Schmidt K.T.
      • Chau C.H.
      • Figg W.D.
      Germline genetics of prostate cancer: prevalence of risk variants and clinical implications for disease management.
      ,
      • Rosen M.N.
      • Goodwin R.A.
      • Vickers M.M.
      BRCA mutated pancreatic cancer: a change is coming.
      ]. However, clinical data have shown that PARPi therapy can be efficacious for patients who test negative with existing HRD diagnostics as well as for patients whose tumours are driven by other HRR mutations or HRD genomic instability that is unrelated to BRCA mutations [
      • Grellety T.
      • Peyraud F.
      • Sevenet N.
      • Tredan O.
      • Dohollou N.
      • Barouk-Simonet E.
      • et al.
      Dramatic response to PARP inhibition in a PALB2-mutated breast cancer: moving beyond BRCA.
      ,
      • Pilié P.G.
      • Gay C.M.
      • Byers L.A.
      • O'Connor M.J.
      • Yap T.A.
      PARP inhibitors: extending benefit beyond BRCA-mutant cancers.
      ,
      • Kuemmel S.
      • Harrach H.
      • Schmutzler R.K.
      • Kostara A.
      • Ziegler-Löhr K.
      • Dyson M.H.
      • et al.
      Olaparib for metastatic breast cancer in a patient with a germline PALB2 variant.
      ,
      • González-Martín A.
      • Pothuri B.
      • Vergote I.
      • DePont Christensen R.
      • Graybill W.
      • Mirza M.R.
      • et al.
      Niraparib in patients with newly diagnosed advanced ovarian cancer.
      ,
      • Li N.
      • Zhu J.
      • Yin R.
      • Wang J.
      • Zhu J.
      • Pan L.
      • et al.
      Efficacy and safety of niraparib as maintenance treatment in patients with newly diagnosed advanced ovarian cancer using an individualized starting dose (PRIME study): a randomized, double-blind, placebo- controlled, phase 3 trial.
      ]. Accordingly, PARPi biomarker tests that are currently available can be categorised into three approaches depending on how they aim to detect the presence of HRD in tumour cells, which include identifying the presence of a mutation that causes HRD (e.g. BRCA mutations), detecting genomic instability (indicative of HRD) or directly testing HRR function in a cellular assay [
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ,
      • Armstrong N.
      • Ryder S.
      • Forbes C.
      • Ross J.
      • Quek R.G.
      A systematic review of the international prevalence of BRCA mutation in breast cancer.
      ,
      • Doan D.K.
      • Schmidt K.T.
      • Chau C.H.
      • Figg W.D.
      Germline genetics of prostate cancer: prevalence of risk variants and clinical implications for disease management.
      ].
      The first approach is evaluating tumour mutation status by gene sequencing of a panel of specified genes known to cause HRD. BRCA1 and BRCA2 are the most well-characterised HRR genes in terms of their relationship to cancer and should always be evaluated. This approach can be expanded to include multiple other genes related to the HRR pathway, but, in some diseases, such as first-line ovarian cancer, non-BRCA HRR mutations do not predict PARPi response, while HRD genomic instability has been predictive (Fig. 1) [
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ,
      • Armstrong N.
      • Ryder S.
      • Forbes C.
      • Ross J.
      • Quek R.G.
      A systematic review of the international prevalence of BRCA mutation in breast cancer.
      ,
      • Doan D.K.
      • Schmidt K.T.
      • Chau C.H.
      • Figg W.D.
      Germline genetics of prostate cancer: prevalence of risk variants and clinical implications for disease management.
      ,
      • Pujade-Lauraine E.
      • Brown J.
      • Barnicle A.
      • Rowe P.
      • Lao-Sirieix P.
      • Criscione S.
      • et al.
      Homologous recombination repair mutation gene panels (excluding BRCA) are not predictive of maintenance olaparib plus bevacizumab efficacy in the first-line PAOLA-1/ENGOT-ov25 trial.
      ]. Emerging evidence suggests that other HRR gene alterations may be associated with different PARPi sensitivity.
      The second approach investigates whether the consequences of HRD, namely genomic instability, are present by identifying chromosomal aberrations (i.e. genomic scars), which are changes in the genome as a consequence of the dysfunctional HRR pathway (both direct and indirect) including LOH, TAI and LST [
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ,
      • Armstrong N.
      • Ryder S.
      • Forbes C.
      • Ross J.
      • Quek R.G.
      A systematic review of the international prevalence of BRCA mutation in breast cancer.
      ,
      • Doan D.K.
      • Schmidt K.T.
      • Chau C.H.
      • Figg W.D.
      Germline genetics of prostate cancer: prevalence of risk variants and clinical implications for disease management.
      ]. Given the recognition of BRCA mutations as an archetypal cause of HRD, BRCA testing is invariably conducted. As such, some assays combine the measurement of both the HRR mutations (i.e. BRCA) and HRD genomic instability approaches.
      The third approach directly evaluates HRR function in tumour cells to determine if there is proficiency. An example of a functional assay is the RAD51 foci assay, which measures the capacity of tumour cells to recruit nuclear RAD51 foci during the S/G2 cell cycle phase in the presence of DSBs using immunofluorescence [
      • Blanc-Durand F.
      • Yaniz E.
      • Genestie C.
      • Rouleau E.
      • Berton D.
      • Lortholary A.
      • et al.
      Evaluation of a RAD51 functional assay in advanced ovarian cancer, a GINECO/GINEGEPS study.
      ]. Functional assays provide a measure of HRR competency, which may be important when, for example, a reversion mutation results in a tumour switching from HRD status to being HRR proficient [
      • Waks A.G.
      • Cohen O.
      • Kochupurakkal B.
      • Kim D.
      • Dunn C.E.
      • Buendia Buendia J.
      • et al.
      Reversion and non-reversion mechanisms of resistance to PARP inhibitor or platinum chemotherapy in BRCA1/2-mutant metastatic breast cancer.
      ]. Because of technical complexity, functional assays such as RAD51 foci are not routinely used clinically.
      Table 1 [
      Foundation Medicine Inc
      FoundationOne®CDx technical information.
      ,
      Foundation Medicine Inc
      FoundationONE Liquid CDx technical information.
      ,
      Myriad Genetics Laboratories Inc
      BRACAnalysis CDx technical information.
      ,
      ,
      ,
      Genetics S
      SOPHiA DDM™ Dx homologous recombination deficiency solution.
      ,
      ] summarises the HRD diagnostics for various PARPi indications. These assays use a variety of sample types (blood or tumour tissue). Other tests for HRR mutations and HRD genomic instability, including locally developed tests, are being established, validated and commercialised.
      Table 1HRD diagnostics for PARPis.
      DiagnosticSample usedBiomarkers evaluatedCancer type (regulatory-approved PARPi)Test category
      FoundationOne®CDx is a comprehensive genomic profiling test that detects substitutions, insertion and deletion alterations and copy number alterations in 324 genes and select gene rearrangements, including a number of HRR genes, as well as genomic signatures including MSI and TMB. LOH is evaluated for patients with ovarian cancer. FoundationOne CDx defines positive HRD status as a BRCA mutation in the tumour and/or LOH-high. On this device, assessment of LOH is designated by the FDA as a complementary, not companion, diagnostic [
      Foundation Medicine Inc
      FoundationOne®CDx technical information.
      ]
      DNA from FFPE tumour tissueBRCA1 and/or BRCA2 alterationsOvarian cancer (olaparib, rucaparib)HRR mutation test
      HRR genes (BRCA1, BRCA2, ATM, BARD1, BRIP1, CDK12, CHEK1, CHEK2, FANCL, PALB2, RAD51B, RAD51C, RAD51D and RAD54L) alterationProstate cancer (olaparib)
      FoundationOne®LiquidCDx evaluates specific HRR gene variants in circulating cell-free DNA [
      Foundation Medicine Inc
      FoundationONE Liquid CDx technical information.
      ]
      cfDNA isolated from plasma derived from anticoagulated peripheral whole bloodBRCA1 and BRCA2 alterationsOvarian cancer (rucaparib)HRR mutation test
      BRCA1, BRCA2 and ATM alterationsProstate cancer (olaparib)
      BRCA1 and BRCA2 alterationsProstate cancer (rucaparib)
      Myriad BRACAnalysisCDx® evaluates BRCA1 and BRCA2 variants in genomic DNA from blood [
      Myriad Genetics Laboratories Inc
      BRACAnalysis CDx technical information.
      ]
      Genomic DNA from whole blood specimensDeleterious or suspected deleterious mutations in BRCA1 and BRCA2 genesBreast cancer (olaparib, talazoparib)BRCA (HRR) mutation test
      Deleterious or suspected deleterious mutations in BRCA1 and BRCA2 genesOvarian cancer (olaparib or rucaparib)
      Deleterious or suspected deleterious mutations in BRCA1 and BRCA2 genesPancreatic cancer (olaparib)
      Deleterious or suspected deleterious mutations in BRCA1 and BRCA2 genesProstate cancer (olaparib)
      Myriad MyChoice®CDx is a comprehensive genomic profiling test specifically for determining HRD status in ovarian cancer [
      ]
      DNA from FFPE tumour tissueMyriad HRD (defined as deleterious or suspected deleterious mutations in BRCA1 and BRCA2 genes and/or positive Genomic Instability Score)Ovarian cancer (olaparib, niraparib)BRCA (HRR) mutation test and HRD genomic instability test
      CE-IVD (European Union)
      A number of BRCA1/BRCA2 tests are also designated CE-IVD.
      DiagnosticSample usedBiomarkers evaluatedCancer typeTest category
      Myriad MyChoice®CDx PLUS is a next-generation sequencing based in vitro diagnostic device that provides sequencing and large rearrangement analyses on a panel of genes and/or detects genomic instability [
      ]
      DNA from FFPE tumour tissueTumour genomic instability and/or detect sequence variants and large rearrangements in up to 15 genes (ATM, BARD1, BRCA1, BRCA2, BRIP1, CDK12, CHEK1, CHEK2, FANCL, PALB2, PPP2R2A, RAD51B, RAD51C, RAD51D and RAD54L)Ovarian cancerHRR mutation test and HRD genomic instability test
      SOPHiA DDM™ Dx Homologous Recombination Deficiency Solution
      HRR gene panel analysis of this test is not covered by the CE-IVD claim.
      is a deep learning–powered diagnostic application leveraging low-pass whole genome sequencing in conjunction with a convolutional neural network–based deep-learning algorithm to produce the Genomic Integrity Index. This score measures the extent of genomic scarring across the genome as a result of mutations within genes associated with HRR, yielding HRD impact on tumour samples [
      Genetics S
      SOPHiA DDM™ Dx homologous recombination deficiency solution.
      ]
      DNA from FFPE tumour tissueAKT1,
      Hotspot coverage only.
      ATM, BARD1, BRCA1, BRCA2, BRIP1, CCNE1, CDK12, CHEK1, CHEK2, ESR1,
      Hotspot coverage only.
      FANCA, FANCD2, FANCL, FGFR1,
      Hotspot coverage only.
      FGFR2,
      Hotspot coverage only.
      FGFR3,
      Hotspot coverage only.
      MRE11, NBN, PALB2, PIK3CA,
      Hotspot coverage only.
      PPP2R2A, PTEN, RAD51B, RAD51C, RAD51D, RAD54L and TP53
      Ovarian cancerHRR mutation test and HRD genomic instability test
      AmoyDx® HRD Focus Panel is a next-generation sequencing-based in vitro diagnostic assay intended for qualitative determination of HRD status via detection and classification of single nucleotide variants and insertions and deletions in protein coding regions and intron/exon boundaries of the BRCA1 and BRCA2 genes and the determination of the Genomic Scar Score, which is an algorithmic measurement of genomic instability status [
      ]
      DNA from FFPE tumour tissueBRCA1, BRCA2 and Genomic Scar ScoreOvarian cancerBRCA (HRR) mutation test and HRD genomic instability test
      Abbreviations: CE-IVD, CE-marked in vitro diagnostics; FFPE, formalin-fixed paraffin embedded; HRD, homologous recombination deficiency; HRR, homologous recombination repair; LOH, loss of heterozygosity; LST, large-scale state transitions; MSI, microsatellite instability; NGS, next-generation sequencing; PARPi, poly (ADP-ribose) polymerase inhibitor; TAI, telomeric allelic imbalance; TMB, tumour mutational burden.
      a A number of BRCA1/BRCA2 tests are also designated CE-IVD.
      b HRR gene panel analysis of this test is not covered by the CE-IVD claim.
      c Hotspot coverage only.

      5. Clinical validity and utility of HRR mutations and tests for HRD in various cancers

      In the first-line maintenance treatment setting of ovarian cancer, the benefit of PARPis in BRCA-mutated tumours was demonstrated in randomised phase 3 trials (Table 2 [
      • González-Martín A.
      • Pothuri B.
      • Vergote I.
      • DePont Christensen R.
      • Graybill W.
      • Mirza M.R.
      • et al.
      Niraparib in patients with newly diagnosed advanced ovarian cancer.
      ,
      • Pujade-Lauraine E.
      • Brown J.
      • Barnicle A.
      • Rowe P.
      • Lao-Sirieix P.
      • Criscione S.
      • et al.
      Homologous recombination repair mutation gene panels (excluding BRCA) are not predictive of maintenance olaparib plus bevacizumab efficacy in the first-line PAOLA-1/ENGOT-ov25 trial.
      ,
      • Ledermann J.
      • Harter P.
      • Gourley C.
      • Friedlander M.
      • Vergote I.
      • Rustin G.
      • et al.
      Olaparib maintenance therapy in platinum-sensitive relapsed ovarian cancer.
      ,
      • Mirza M.R.
      • Monk B.J.
      • Herrstedt J.
      • Oza A.M.
      • Mahner S.
      • Redondo A.
      • et al.
      Niraparib maintenance therapy in platinum-sensitive, recurrent ovarian cancer.
      ,
      • Coleman R.L.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib maintenance treatment for recurrent ovarian carcinoma after response to platinum therapy (ARIEL3): a randomised, double-blind, placebo-controlled, phase 3 trial.
      ,
      • Ledermann J.A.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib for patients with platinum-sensitive, recurrent ovarian carcinoma (ARIEL3): post-progression outcomes and updated safety results from a randomised, placebo-controlled, phase 3 trial.
      ,
      • Ray-Coquard I.
      • Pautier P.
      • Pignata S.
      • Pérol D.
      • González-Martín A.
      • Berger R.
      • et al.
      Olaparib plus bevacizumab as first-line maintenance in ovarian cancer.
      ,
      • Moore K.
      • Colombo N.
      • Scambia G.
      • Kim B.G.
      • Oaknin A.
      • Friedlander M.
      • et al.
      Maintenance olaparib in patients with newly diagnosed advanced ovarian cancer.
      ,
      • Monk B.J.
      • Parkinson C.
      • Lim M.C.
      • O'Malley D.M.
      • Oaknin A.
      • Wilson M.K.
      • et al.
      A randomized, phase III trial to evaluate rucaparib monotherapy as maintenance treatment in patients with newly diagnosed ovarian cancer (ATHENA-MONO/GOG-3020/ENGOT-ov45).
      ,
      • Moore K.N.
      • Secord A.A.
      • Geller M.A.
      • Miller D.S.
      • Cloven N.
      • Fleming G.F.
      • et al.
      Niraparib monotherapy for late-line treatment of ovarian cancer (QUADRA): a multicentre, open-label, single-arm, phase 2 trial.
      ,
      • Kristeleit R.
      Rucaparib versus chemotherapy in patients with advanced, relapsed ovarian cancer and a deleterious BRCA mutation: efficacy and safety from ARIEL4, a randomized phase III study.
      ,
      • Penson R.T.
      • Valencia R.V.
      • Cibula D.
      • Colombo N.
      • Leath C.A.
      • Bidzinski M.
      • et al.
      Olaparib versus nonplatinum chemotherapy in patients with platinum-sensitive relapsed ovarian cancer and a germline BRCA1/2 mutation (SOLO3): a randomized phase III trial.
      ]).
      Table 2Clinical trials of PARPis in ovarian cancer evaluating the predictive value of BRCA mutations, HRR mutations or HRD status.
      StudyStudy designTreatmentsInclusion criteriaHRRm or HRD statusPrimary endpoint
      First-line maintenance therapy
      PAOLA-1/ENGOT-ov25 (NCT02477644) [
      • Ray-Coquard I.
      • Pautier P.
      • Pignata S.
      • Pérol D.
      • González-Martín A.
      • Berger R.
      • et al.
      Olaparib plus bevacizumab as first-line maintenance in ovarian cancer.
      ]
      Phase 3, randomised, double-blind, multicenterOlaparib 300 mg BID + bevacizumab (n = 537) versus placebo + bevacizumab (n = 269)Newly diagnosed, advanced high-grade serous or endometrioid ovarian, primary peritoneal or fallopian tube cancer; complete or partial response after platinum-taxane chemotherapy plus bevacizumabDeleterious germline BRCA1 or BRCA2 mutation (MyChoice® HRD Plus assay)

      HRD-positive defined as HRD score ≥42
      PFS

      Overall: 22.1 versus 16.6 mo (HR 0.59; 95% CI: 0.49–0.72)

      BRCA-mutated HRD-positive: 37.2 versus 17.7 mo (HR 0.33; 95% CI: 0.25–0.45)

      Non-BRCA HRD-positive: 28.1 versus 16.6 mo (HR 0.43; 95% CI: 0.28–0.66)
      SOLO1 (NCT01844986) [
      • Moore K.
      • Colombo N.
      • Scambia G.
      • Kim B.G.
      • Oaknin A.
      • Friedlander M.
      • et al.
      Maintenance olaparib in patients with newly diagnosed advanced ovarian cancer.
      ]
      Phase 3, randomised, double-blind, multicenterOlaparib 300 mg BID (n = 260) versus

      placebo (n = 131)
      Newly diagnosed, advanced high-grade serous or endometrioid ovarian, primary peritoneal or fallopian tube cancer; complete or partial response after platinum-based chemotherapy without bevacizumabDeleterious or suspected deleterious germline or somatic BRCA1 and/or BRCA2 mutation (BRACAnalysis test)PFS

      NR versus 13.8 mo (HR 0.30; 95% CI: 0.23–0.41)

      PFS rate at 3 years

      60% versus 27%
      PRIMA/ENGOT-OV26/GOG-3012 (NCT02655016) [
      • González-Martín A.
      • Pothuri B.
      • Vergote I.
      • DePont Christensen R.
      • Graybill W.
      • Mirza M.R.
      • et al.
      Niraparib in patients with newly diagnosed advanced ovarian cancer.
      ]
      Phase 3, randomised, double-blind, multicenterNiraparib 300 mg/day (200 mg/day if bodyweight <77 kg; n = 487) versus placebo (n = 246)Newly diagnosed, advanced high-grade serous or endometrioid ovarian, peritoneal or fallopian tube cancer; complete or partial response after platinum-based chemotherapyHRD-positive defined as HRD score ≥42 and/or a deleterious BRCA mutation (MyChoice test)PFS

      Overall: 13.8 versus 8.2 mo (HR 0.62; 95% CI: 0.50–0.76)

      HRD-positive: 21.9 versus 10.4 mo (HR 0.43; 95% CI: 0.31–0.59)
      ATHENA-MONO/GOG-3020/ENGOT-ov45 (NCT03522246) [
      • Monk B.J.
      • Parkinson C.
      • Lim M.C.
      • O'Malley D.M.
      • Oaknin A.
      • Wilson M.K.
      • et al.
      A randomized, phase III trial to evaluate rucaparib monotherapy as maintenance treatment in patients with newly diagnosed ovarian cancer (ATHENA-MONO/GOG-3020/ENGOT-ov45).
      ]
      Phase 3, randomised, double-blind, multicenterRucaparib 600 mg BID (n = 427) versus placebo (n = 111)Newly diagnosed, advanced high-grade epithelial ovarian, fallopian tube or primary peritoneal cancer; complete or partial response after platinum-based chemotherapyTumour HRD test status (BRCA mutations and genomic LOH; FoundationOne CDx)PFS

      ITT: 20.2 versus 9.2 mo (HR 0.52; 95% CI: 0.40–0.68)

      HRD-positive: 28.7 versus 11.3 mo (HR, 0.47; 95% CI: 0.31–0.72)
      Relapsed/recurrent treatment strategies
      QUADRA (NCT02354586) [
      • Moore K.N.
      • Secord A.A.
      • Geller M.A.
      • Miller D.S.
      • Cloven N.
      • Fleming G.F.
      • et al.
      Niraparib monotherapy for late-line treatment of ovarian cancer (QUADRA): a multicentre, open-label, single-arm, phase 2 trial.
      ]
      Phase 2, open-label, single-arm, multicenterNiraparib 300 mg QD (N = 463)Metastatic, relapsed high-grade serous epithelial ovarian, fallopian tube or primary peritoneal cancer; ≥3 prior lines of chemotherapyGermline BRCA1 and/or BRCA2 variants and HRD score (MyChoice HRD test)PFS

      HRD-positive tumours sensitive to platinum-based therapy and naive to PARPi: 5.5 mo
      Study 19 (NCT00753545) [
      • Ledermann J.
      • Harter P.
      • Gourley C.
      • Friedlander M.
      • Vergote I.
      • Rustin G.
      • et al.
      Olaparib maintenance therapy in platinum-sensitive relapsed ovarian cancer.
      ]
      Phase 2, randomised, double-blind, multicenterOlaparib 400 mg BID (n = 136) versus placebo (n = 129)Recurrent high-grade serous ovarian, fallopian tube or primary peritoneal cancer; platinum-sensitive; ≥2 courses of platinum-based chemotherapyBRCA1 and/or BRCA2 mutation status not requiredPFS

      ITT: 8.4 versus 4.8 mo (HR 0.35; 95% CI: 0.25–0.49)

      BRCA-mutated: HR 0.18 (95% CI: 0.10–0.31)

      Non-BRCA–mutated: HR 0.54 (95% CI: 0.34–0.85)

      Non-BRCA–mutated HRD-positive: HR 0.48 (95% CI: 0.18–1.27)

      Non-BRCA–mutated HRD-negative: HR 0.60 (95% CI: 0.31–1.17)
      SOLO2/ENGOT-Ov21 (NCT01874353) [
      • Pujade-Lauraine E.
      • Brown J.
      • Barnicle A.
      • Rowe P.
      • Lao-Sirieix P.
      • Criscione S.
      • et al.
      Homologous recombination repair mutation gene panels (excluding BRCA) are not predictive of maintenance olaparib plus bevacizumab efficacy in the first-line PAOLA-1/ENGOT-ov25 trial.
      ]
      Phase 3, randomised, double-blind, multicenterOlaparib 300 mg BID (n = 196) versus placebo (n = 99)Relapsed, high-grade serous or endometrioid ovarian, fallopian tube or primary peritoneal cancer; platinum-sensitive; ≥2 prior lines of platinum-based chemotherapy; BRCA1 and/or BRCA2 mutationDeleterious BRCA1 and/or BRCA2 mutation (BRACAnalysis assay)PFS

      19.1 versus 5.5 mo (HR 0.30; 95% CI: 0.22–0.41)
      SOLO3 (NCT02282020) [
      • Penson R.T.
      • Valencia R.V.
      • Cibula D.
      • Colombo N.
      • Leath C.A.
      • Bidzinski M.
      • et al.
      Olaparib versus nonplatinum chemotherapy in patients with platinum-sensitive relapsed ovarian cancer and a germline BRCA1/2 mutation (SOLO3): a randomized phase III trial.
      ]
      Phase 3, randomised, open-label, multicenterOlaparib 300 mg BID (n = 178) versus nonplatinum chemotherapy (n = 88)Relapsed, high-grade serous or endometrioid ovarian, primary peritoneal and/or fallopian tube cancer; platinum-sensitive; ≥2 prior lines of platinum-based chemotherapy; gBRCA mutationDeleterious or suspected deleterious germline BRCA1 or BRCA2 mutation (BRACAnalysis assay)PFS

      13.4 versus 9.2 mo (HR 0.62; 95% CI: 0.43–0.91)
      NOVA/ENGOT-OV16 (NCT01847274) [
      • Mirza M.R.
      • Monk B.J.
      • Herrstedt J.
      • Oza A.M.
      • Mahner S.
      • Redondo A.
      • et al.
      Niraparib maintenance therapy in platinum-sensitive, recurrent ovarian cancer.
      ]
      Phase 3, randomised, double-blind, multicenterNiraparib 300 mg (gBRCA mutation cohort, n = 138; non-BRCA cohort, n = 234) versus placebo (gBRCA mutation cohort, n = 65; non-gBRCA mutation cohort, n = 116)Recurrent, high-grade serous ovarian, fallopian tube or primary peritoneal cancer; platinum-sensitive; ≥2 prior lines of platinum-based chemotherapyGermline BRCA mutation (BRACAnalysis assay)

      HRD status also assessed (MyChoice HRD assay)
      PFS

      gBRCA-mutated cohort: 21.0 versus 5.5 mo (HR 0.27; 95% CI: 0.17–0.41)

      Non-gBRCA–mutated HRD-positive cohort: 12.9 versus 3.8 mo (HR 0.38; 95% CI: 0.24–0.59)

      Overall non-gBRCA–mutated cohort: 9.3 versus 3.9 mo (HR 0.45; 95% CI: 0.34–0.61)
      ARIEL3 (NCT01968213) [
      • Coleman R.L.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib maintenance treatment for recurrent ovarian carcinoma after response to platinum therapy (ARIEL3): a randomised, double-blind, placebo-controlled, phase 3 trial.
      ,
      • Ledermann J.A.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib for patients with platinum-sensitive, recurrent ovarian carcinoma (ARIEL3): post-progression outcomes and updated safety results from a randomised, placebo-controlled, phase 3 trial.
      ]
      Phase 3, randomised, double-blind, multicenterRucaparib 600 mg BID (n = 375) versus placebo (n = 189)Recurrent, high-grade serous or endometrioid ovarian, fallopian tube or primary peritoneal cancer; platinum-sensitive; ≥2 prior lines of platinum-based chemotherapyBRCA1 or BRCA2 mutation non-BRCA HRR-related gene mutation (T5 next-generation sequencing assay; germline mutations identified with BRCAnalysis CDx test)Investigator-assessed PFS (primary analysis)

      Overall: 10.8 versus 5.4 mo (HR 0.36; 95% CI: 0.30–0.45)

      BRCA mutated cohort: 16.6 versus 5.4 mo (HR 0.23; 95% CI: 0.16–0.34)

      HRD cohort: 13.6 versus 5.4 mo (HR 0.32; 95% CI: 0.24–0.42)

      Chemotherapy-free interval (post-progression)

      Overall: 14.3 versus 8.8 mo (HR 0.43; 95% CI: 0.35–0.53)

      BRCA-mutated cohort: 20.8 versus 8.7 mo (HR 0.28; 95% CI: 0.19–0.41)

      HRD cohort: 18.0 versus 9.1 mo (HR 0.40; 95% CI: 0.31–0.53)

      Investigator-assessed PFS2 (post-progression)

      Overall: 21.0 versus 16.5 mo (HR 0.66; 95% CI: 0.53–0.82)

      BRCA-mutated cohort: 26.8 versus 18.4 mo (HR 0.56; 95% CI: 0.38–0.83)

      HRD cohort: 25.3 versus 18.4 mo (HR 0.66; 95% CI: 0.49–0.87)
      ARIEL4 (NCT02855944) [
      • Kristeleit R.
      Rucaparib versus chemotherapy in patients with advanced, relapsed ovarian cancer and a deleterious BRCA mutation: efficacy and safety from ARIEL4, a randomized phase III study.
      ]
      Phase 3, randomised, open-label, multicenterRucaparib 600 mg BID (n = 233) versus chemotherapy (n = 116)Relapsed, high-grade epithelial ovarian, fallopian tube or primary peritoneal cancer; PARPi-naive; ≥2 prior lines of chemotherapyDeleterious BRCA1 and/or BRCA2 mutation

      BRCA reversion mutations were also assessed
      PFS

      Significantly longer for rucaparib versus chemotherapy

      BRCA reversion mutation subgroup: 2.9 versus 5.5 mo (HR 2.769; 95% CI: 0.989–7.755)
      Abbreviations: BID, twice daily; gBRCA germline BRCA mutation; HR, hazard ratio; HRD, homologous recombination deficiency; HRRm, homologous recombination repair gene mutation; ITT, intention-to-treat; PARPi, poly (ADP-ribose) polymerase inhibitor; PFS, progression-free survival.
      HRD positivity (defined as a tumour with a BRCA mutation or a genomic instability score above a specified threshold for the HRD assay used) was also associated with a PFS benefit with PARPis in randomised phase 3 trials in the first-line maintenance treatment setting in advanced ovarian cancer (Table 2 [
      • González-Martín A.
      • Pothuri B.
      • Vergote I.
      • DePont Christensen R.
      • Graybill W.
      • Mirza M.R.
      • et al.
      Niraparib in patients with newly diagnosed advanced ovarian cancer.
      ,
      • Pujade-Lauraine E.
      • Brown J.
      • Barnicle A.
      • Rowe P.
      • Lao-Sirieix P.
      • Criscione S.
      • et al.
      Homologous recombination repair mutation gene panels (excluding BRCA) are not predictive of maintenance olaparib plus bevacizumab efficacy in the first-line PAOLA-1/ENGOT-ov25 trial.
      ,
      • Ledermann J.
      • Harter P.
      • Gourley C.
      • Friedlander M.
      • Vergote I.
      • Rustin G.
      • et al.
      Olaparib maintenance therapy in platinum-sensitive relapsed ovarian cancer.
      ,
      • Mirza M.R.
      • Monk B.J.
      • Herrstedt J.
      • Oza A.M.
      • Mahner S.
      • Redondo A.
      • et al.
      Niraparib maintenance therapy in platinum-sensitive, recurrent ovarian cancer.
      ,
      • Coleman R.L.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib maintenance treatment for recurrent ovarian carcinoma after response to platinum therapy (ARIEL3): a randomised, double-blind, placebo-controlled, phase 3 trial.
      ,
      • Ledermann J.A.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib for patients with platinum-sensitive, recurrent ovarian carcinoma (ARIEL3): post-progression outcomes and updated safety results from a randomised, placebo-controlled, phase 3 trial.
      ,
      • Ray-Coquard I.
      • Pautier P.
      • Pignata S.
      • Pérol D.
      • González-Martín A.
      • Berger R.
      • et al.
      Olaparib plus bevacizumab as first-line maintenance in ovarian cancer.
      ,
      • Moore K.
      • Colombo N.
      • Scambia G.
      • Kim B.G.
      • Oaknin A.
      • Friedlander M.
      • et al.
      Maintenance olaparib in patients with newly diagnosed advanced ovarian cancer.
      ,
      • Monk B.J.
      • Parkinson C.
      • Lim M.C.
      • O'Malley D.M.
      • Oaknin A.
      • Wilson M.K.
      • et al.
      A randomized, phase III trial to evaluate rucaparib monotherapy as maintenance treatment in patients with newly diagnosed ovarian cancer (ATHENA-MONO/GOG-3020/ENGOT-ov45).
      ,
      • Moore K.N.
      • Secord A.A.
      • Geller M.A.
      • Miller D.S.
      • Cloven N.
      • Fleming G.F.
      • et al.
      Niraparib monotherapy for late-line treatment of ovarian cancer (QUADRA): a multicentre, open-label, single-arm, phase 2 trial.
      ,
      • Kristeleit R.
      Rucaparib versus chemotherapy in patients with advanced, relapsed ovarian cancer and a deleterious BRCA mutation: efficacy and safety from ARIEL4, a randomized phase III study.
      ,
      • Penson R.T.
      • Valencia R.V.
      • Cibula D.
      • Colombo N.
      • Leath C.A.
      • Bidzinski M.
      • et al.
      Olaparib versus nonplatinum chemotherapy in patients with platinum-sensitive relapsed ovarian cancer and a germline BRCA1/2 mutation (SOLO3): a randomized phase III trial.
      ]). A recent exploratory analysis evaluating HRR mutations other than BRCA demonstrated that only a small percentage (4%) of patients with HRD-positive tumours without a BRCA mutation harbour other non-BRCA HRR mutations commonly included in the HRR mutation testing panel [
      • Pujade-Lauraine E.
      • Brown J.
      • Barnicle A.
      • Rowe P.
      • Lao-Sirieix P.
      • Criscione S.
      • et al.
      Homologous recombination repair mutation gene panels (excluding BRCA) are not predictive of maintenance olaparib plus bevacizumab efficacy in the first-line PAOLA-1/ENGOT-ov25 trial.
      ]. A PFS benefit with olaparib plus bevacizumab versus placebo plus bevacizumab was not observed in the subgroup of patients with non-BRCA HRR mutations; however, in a small number of these patients, HRD-positive status by genomic instability testing was predictive of a PFS benefit [
      • Pujade-Lauraine E.
      • Brown J.
      • Barnicle A.
      • Rowe P.
      • Lao-Sirieix P.
      • Criscione S.
      • et al.
      Homologous recombination repair mutation gene panels (excluding BRCA) are not predictive of maintenance olaparib plus bevacizumab efficacy in the first-line PAOLA-1/ENGOT-ov25 trial.
      ].
      In patients with relapsed platinum-sensitive ovarian cancer, HRR mutation, HRD status and response to immediate platinum chemotherapy are all predictive of a PFS benefit with PARPis, as demonstrated by the findings from four clinical trials (Table 2 [
      • González-Martín A.
      • Pothuri B.
      • Vergote I.
      • DePont Christensen R.
      • Graybill W.
      • Mirza M.R.
      • et al.
      Niraparib in patients with newly diagnosed advanced ovarian cancer.
      ,
      • Pujade-Lauraine E.
      • Brown J.
      • Barnicle A.
      • Rowe P.
      • Lao-Sirieix P.
      • Criscione S.
      • et al.
      Homologous recombination repair mutation gene panels (excluding BRCA) are not predictive of maintenance olaparib plus bevacizumab efficacy in the first-line PAOLA-1/ENGOT-ov25 trial.
      ,
      • Ledermann J.
      • Harter P.
      • Gourley C.
      • Friedlander M.
      • Vergote I.
      • Rustin G.
      • et al.
      Olaparib maintenance therapy in platinum-sensitive relapsed ovarian cancer.
      ,
      • Mirza M.R.
      • Monk B.J.
      • Herrstedt J.
      • Oza A.M.
      • Mahner S.
      • Redondo A.
      • et al.
      Niraparib maintenance therapy in platinum-sensitive, recurrent ovarian cancer.
      ,
      • Coleman R.L.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib maintenance treatment for recurrent ovarian carcinoma after response to platinum therapy (ARIEL3): a randomised, double-blind, placebo-controlled, phase 3 trial.
      ,
      • Ledermann J.A.
      • Oza A.M.
      • Lorusso D.
      • Aghajanian C.
      • Oaknin A.
      • Dean A.
      • et al.
      Rucaparib for patients with platinum-sensitive, recurrent ovarian carcinoma (ARIEL3): post-progression outcomes and updated safety results from a randomised, placebo-controlled, phase 3 trial.
      ,
      • Ray-Coquard I.
      • Pautier P.
      • Pignata S.
      • Pérol D.
      • González-Martín A.
      • Berger R.
      • et al.
      Olaparib plus bevacizumab as first-line maintenance in ovarian cancer.
      ,
      • Moore K.
      • Colombo N.
      • Scambia G.
      • Kim B.G.
      • Oaknin A.
      • Friedlander M.
      • et al.
      Maintenance olaparib in patients with newly diagnosed advanced ovarian cancer.
      ,
      • Monk B.J.
      • Parkinson C.
      • Lim M.C.
      • O'Malley D.M.
      • Oaknin A.
      • Wilson M.K.
      • et al.
      A randomized, phase III trial to evaluate rucaparib monotherapy as maintenance treatment in patients with newly diagnosed ovarian cancer (ATHENA-MONO/GOG-3020/ENGOT-ov45).
      ,
      • Moore K.N.
      • Secord A.A.
      • Geller M.A.
      • Miller D.S.
      • Cloven N.
      • Fleming G.F.
      • et al.
      Niraparib monotherapy for late-line treatment of ovarian cancer (QUADRA): a multicentre, open-label, single-arm, phase 2 trial.
      ,
      • Kristeleit R.
      Rucaparib versus chemotherapy in patients with advanced, relapsed ovarian cancer and a deleterious BRCA mutation: efficacy and safety from ARIEL4, a randomized phase III study.
      ,
      • Penson R.T.
      • Valencia R.V.
      • Cibula D.
      • Colombo N.
      • Leath C.A.
      • Bidzinski M.
      • et al.
      Olaparib versus nonplatinum chemotherapy in patients with platinum-sensitive relapsed ovarian cancer and a germline BRCA1/2 mutation (SOLO3): a randomized phase III trial.
      ]).
      The European Society for Medical Oncology Translational Research and Precision Medicine Working Group recently assessed evidence of predictive biomarkers in high-grade serous ovarian cancer and recommended the use of germline or somatic BRCA mutation testing and a validated scar-based (genomic instability) test for HRD to select patients for PARPi treatment in the first-line maintenance and in the platinum-sensitive relapsed settings [
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ]. This group concluded that evidence is currently insufficient to determine the clinical validity of non-BRCA HRR mutation, next-generation sequencing-based mutational signature, BRCA1 or RAD51C promoter methylation and functional assays for predicting a PARPi response [
      • Miller R.E.
      • Leary A.
      • Scott C.L.
      • Serra V.
      • Lord C.J.
      • Bowtell D.
      • et al.
      ESMO recommendations on predictive biomarker testing for homologous recombination deficiency and PARP inhibitor benefit in ovarian cancer.
      ]. Data on the clinical validity of somatic BRCA mutations, HRR mutations and HRD genomic instability tests in other cancers besides mCRPC are limited.
      Olaparib, rucaparib and niraparib have demonstrated antitumour activity in people with BRCA-mutated mCRPC [
      • Mateo J.
      • Porta N.
      • Bianchini D.
      • McGovern U.
      • Elliott T.
      • Jones R.
      • et al.
      Olaparib in patients with metastatic castration-resistant prostate cancer with DNA repair gene aberrations (TOPARP-B): a multicentre, open-label, randomised, phase 2 trial.
      ,
      • Smith M.R.
      • Scher H.I.
      • Sandhu S.
      • Efstathiou E.
      • Lara Jr., P.N.
      • Yu E.Y.
      • et al.
      Niraparib in patients with metastatic castration-resistant prostate cancer and DNA repair gene defects (GALAHAD): a multicentre, open-label, phase 2 trial.
      ]. The PROfound and TRITON2 trials explored treatment outcomes in patients with mutations in other HRR genes [
      • de Bono J.
      • Mateo J.
      • Fizazi K.
      • Saad F.
      • Shore N.
      • Sandhu S.
      • et al.
      Olaparib for metastatic castration-resistant prostate cancer.
      ,
      • Abida W.
      • Campbell D.
      • Patnaik A.
      • Shapiro J.D.
      • Sautois B.
      • Vogelzang N.J.
      • et al.
      Non-BRCA DNA damage repair gene alterations and response to the PARP inhibitor rucaparib in metastatic castration-resistant prostate cancer: analysis from the phase ii TRITON2 study.
      ]. PROfound was a randomised, open-label phase 3 trial evaluating olaparib versus physician's choice of hormone therapy (enzalutamide or abiraterone) in mCRPC with a qualifying alteration in any one of 15 HRR genes [
      • de Bono J.
      • Mateo J.
      • Fizazi K.
      • Saad F.
      • Shore N.
      • Sandhu S.
      • et al.
      Olaparib for metastatic castration-resistant prostate cancer.
      ]. In patients with ≥1 alteration in BRCA1, BRCA2 or ATM, PFS was significantly prolonged for the olaparib versus the control group (median, 7.4 versus 3.6 months; hazard ratio [HR] 0.34; 95% CI: 0.25–0.47) and with statistically significant OS benefit (median, 19.1 versus 14.7 months; HR 0.69; 95% CI: 0.50–0.97; p = 0.0175) [
      • de Bono J.S.
      • Mateo J.
      • Fizazi K.
      • Saad F.
      • Shore N.
      • Sandhu S.
      • et al.
      Final overall survival (OS) analysis of PROfound: olaparib vs physician’s choice of enzalutamide or abiraterone in patients (pts) with metastatic castration-resistant prostate cancer (mCRPC) and homologous recombination repair (HRR) gene alterations.
      ]. A PFS benefit was also observed in the overall population (any HRR mutation) with an HR of 0.49 (95% CI: 0.38–0.63), and a trend toward improved OS was also seen (HR 0.79; 95% CI: 0.61–1.03; nominal p = 0.0515). The HR for PFS in patients with HRR mutations other than BRCA1, BRCA2 or ATM was 0.88. In the phase 2 TRITON2 trial, rucaparib was evaluated in patients with mCRPC and a non-BRCA HRR mutation. The trial found limited radiographic and prostate-specific antigen responses to rucaparib in patients with an alteration in ATM, CDK12 or CHEK2; patients with alterations in other HRR mutations (e.g. PALB2) may benefit from rucaparib, but the patient subgroup sizes were too small to make definitive conclusions; further investigation was deemed warranted [
      • Abida W.
      • Campbell D.
      • Patnaik A.
      • Shapiro J.D.
      • Sautois B.
      • Vogelzang N.J.
      • et al.
      Non-BRCA DNA damage repair gene alterations and response to the PARP inhibitor rucaparib in metastatic castration-resistant prostate cancer: analysis from the phase ii TRITON2 study.
      ].
      In advanced/metastatic breast cancer, olaparib has demonstrated a PFS benefit versus chemotherapy in patients with a germline BRCA mutation in two randomised, open-label phase 3 clinical trials [
      • Robson M.
      • Im S.A.
      • Senkus E.
      • Xu B.
      • Domchek S.M.
      • Masuda N.
      • et al.
      Olaparib for metastatic breast cancer in patients with a germline BRCA mutation.
      ,
      • Litton J.K.
      • Rugo H.S.
      • Ettl J.
      • Hurvitz S.A.
      • Gonçalves A.
      • Lee K.-H.
      • et al.
      Talazoparib in patients with advanced breast cancer and a germline BRCA mutation.
      ]. In OlympiAD, olaparib significantly prolonged median PFS versus chemotherapy (7.0 versus 4.2 months; HR 0.58; 95% CI: 0.43–0.80) in patients with a germline BRCA mutation and human epidermal growth factor receptor type 2-negative metastatic breast cancer treated with ≤2 previous chemotherapies. Olaparib has also been associated with a median PFS of 6.3 months (90% CI: 4.4–not available) in 16 patients with metastatic breast cancer and a somatic BRCA mutation [
      • Tung N.M.
      • Robson M.E.
      • Ventz S.
      • Santa-Maria C.A.
      • Nanda R.
      • Marcom P.K.
      • et al.
      TBCRC 048: phase II study of olaparib for metastatic breast cancer and mutations in homologous recombination-related genes.
      ]. In the EMBRACA study, talazoparib significantly prolonged median PFS versus chemotherapy in patients with a germline BRCA mutation and advanced breast cancer treated with ≤3 previous chemotherapies (8.6 versus 5.6 months; HR 0.54; 95% CI: 0.41–0.71) [
      • Litton J.K.
      • Rugo H.S.
      • Ettl J.
      • Hurvitz S.A.
      • Gonçalves A.
      • Lee K.-H.
      • et al.
      Talazoparib in patients with advanced breast cancer and a germline BRCA mutation.
      ].
      Approval of olaparib maintenance therapy for pancreatic cancer was based on results from the pivotal phase 3 POLO trial in patients with a germline BRCA1 or BRCA2 mutation and metastatic disease that had not progressed during first-line platinum-based chemotherapy. A PFS benefit in favour of olaparib versus placebo was reported (median, 7.4 versus 3.8 months; HR 0.53; 95% CI: 0.35–0.82) [
      • Golan T.
      • Hammel P.
      • Reni M.
      • Van Cutsem E.
      • Macarulla T.
      • Hall M.J.
      • et al.
      Maintenance olaparib for germline BRCA-mutated metastatic pancreatic cancer.
      ].

      6. Conclusions

      Patients with HRD tumours caused by a BRCA mutation represent the subgroup with the best-documented clinical benefit from a PARPi, and whether non-BRCA HRR mutations or HRD genomic instability tests best predict PARPi response by disease site requires further research in many indications. BRCA mutations remain the best-characterised measure of HRD and should always be assessed regardless of other assays that might be used (e.g. assessment of other HRR-related genes or HRD genomic instability). However, patients with HRD tumours without a BRCA mutation can benefit from PARPis in first-line ovarian cancer. HRD is a phenotype that can be measured in different ways, such as by identifying genomic scars or mutational signatures or by measuring HRR function. Further, HRD genomic instability gives a historical rather than a functional view of the genome, hence the interest in functional assays such as that for RAD51 foci. However, varying degrees of evidence exist for the predictive value of these different measures. Inconsistent use of terminology adds to the confusion over these tests. The regulatory-approved companion diagnostics are specific to each PARPi, tumour type, and treatment setting. HRR mutations and HRD genomic instability tests have different predictive power in different clinical settings and are not interchangeable. In newly diagnosed advanced ovarian cancer, HRD positivity by genomic instability tests, but not non-BRCA HRR mutations, are predictive of benefit from PARPi maintenance treatment after response to first-line platinum chemotherapy. In the relapsed setting, selection for benefit from PARPi is based on platinum sensitivity. HRR mutation tests have been validated in patients with prostate cancer whereas there are few data on the clinical validity of HRD genomic instability testing. Future clinical and translational studies are needed to further elucidate the mechanisms by which PARPis interact with HRD to inform treatment strategies and patient selection.

      Funding

      This work was funded by Merck Sharp & Dohme LLC, a subsidiary of Merck & Co., Inc., Rahway, NJ, USA, and AstraZeneca, Cambridge, UK.

      Data sharing

      Merck Sharp & Dohme LLC, a subsidiary of Merck & Co., Inc., Rahway, NJ, USA (MSD) is committed to providing qualified scientific researchers access to anonymised data and clinical study reports from the company's clinical trials for the purpose of conducting legitimate scientific research. MSD is also obligated to protect the rights and privacy of trial participants and, as such, has a procedure in place for evaluating and fulfilling requests for sharing company clinical trial data with qualified external scientific researchers. The MSD data sharing website (available at: http://engagezone.msd.com/ds_documentation.php) outlines the process and requirements for submitting a data request. Applications will be promptly assessed for completeness and policy compliance. Feasible requests will be reviewed by a committee of MSD subject matter experts to assess the scientific validity of the request and the qualifications of the requestors. In line with data privacy legislation, submitters of approved requests must enter into a standard data-sharing agreement with MSD before data access is granted. Data will be made available for request after product approval in the US and EU or after product development is discontinued. There are circumstances that may prevent MSD from sharing requested data, including country or region-specific regulations. If the request is declined, it will be communicated to the investigator. Access to genetic or exploratory biomarker data requires a detailed, hypothesis-driven statistical analysis plan that is collaboratively developed by the requestor and MSD subject matter experts; after approval of the statistical analysis plan and execution of a data-sharing agreement, MSD will either perform the proposed analyses and share the results with the requestor or will construct biomarker covariates and add them to a file with clinical data that is uploaded to an analysis portal so that the requestor can perform the proposed analyses.

      Author contributions

      Thomas J. Herzog: Formal analysis; validation; draft writing; other – critically reviewing or revising the manuscript for important intellectual content and final approval.
      Ignace Vergote: conceptualisation; validation; draft writing; other – critically reviewing or revising the manuscript for important intellectual content and final approval.
      Leonard G. Gomella: conceptualisation; validation; other – critically reviewing or revising the manuscript for important intellectual content and final approval.
      Tsveta Milenkova: conceptualisation; validation; other – critically reviewing or revising the manuscript for important intellectual content and final approval.
      Tim French: conceptualisation; formal analysis; validation; draft writing; other – critically reviewing or revising the manuscript for important intellectual content and final approval.
      Raffi Tonikian: formal analysis; other – critically reviewing or revising the manuscript for important intellectual content and final approval.
      Christian Poehlein: conceptualisation; data curation; formal analysis; validation; draft writing; other – critically reviewing or revising the manuscript for important intellectual content and final approval.
      Maha Hussain: other – critically reviewing or revising the manuscript for important intellectual content and final approval.

      Conflict of interest statement

      The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: TH reports scientific advisory boards for AstraZeneca, Caris, Clovis, Eisai, Epsilogen, Genentech, GSK, Immunogen, J&J, Merck, Mersana, and Seagen.
      IV reports consulting for Agenus, Akesobio China, Amgen (Europe) GmbH, AstraZeneca, Bristol Myers Squibb, Clovis Oncology Inc., Carrick Therapeutics, Deciphera Pharmaceuticals, Eisai, Elevar Therapeutics, F. Hoffmann-La Roche Ltd, Genmab, GSK, Immunogen Inc., Jazzpharma, Karyopharm, Mersana, Millennium Pharmaceuticals, MSD, Novocure, Novartis, Octimet Oncology NV, Oncoinvent AS, Seagen, Sotio a.s., Verastem Oncology and Zentalis; contracted research (via KU Leuven) for Oncoinvent AS and Genmab; grant (i.e. corporate sponsored research) for Amgen and Roche and accommodations and/or travel expenses for Amgen, MSD, Tesaro, AstraZeneca and Roche.
      LGG reports scientific advisory boards for AstraZeneca, Merck, Lantheus and Exelixis.
      TM is an employee of AstraZeneca.
      TF is an employee and stockholder of AstraZeneca.
      RT is a former employee of Merck Sharp & Dohme LLC, a subsidiary of Merck & Co., Inc., Rahway, NJ, USA, and stockholder of Merck & Co., Inc., Rahway, NJ, USA.
      CP is an employee of Merck Sharp & Dohme LLC, a subsidiary of Merck & Co., Inc., Rahway, NJ, USA, and stockholder of Merck & Co., Inc., Rahway, NJ, USA.
      MH reports scientific advisory boards for Astra Zeneca, Merck, Janssen, Novartis, TEMPUS, Bayer, GSK, Pfizer and BMS.

      Acknowledgements

      This work was supported by Merck Sharp & Dohme LLC, a subsidiary of Merck & Co., Inc., Rahway, NJ, USA, and AstraZeneca LTD, Cambridge, UK, which are codeveloping olaparib. The funders participated in study design, data analysis and interpretation, and article writing. All authors had full access to the data and had final responsibility for the decision to submit the article for publication. Medical writing and/or editorial assistance was provided by Lei Bai, PhD, Max Chang, PhD, Holly C. Cappelli, PhD, CMPP, and Christina Vitolo of ApotheCom (Yardley, PA) and was funded by Merck Sharp & Dohme LLC, a subsidiary of Merck & Co., Inc., Rahway, NJ, USA, and AstraZeneca LTD, Cambridge, UK, which are codeveloping olaparib.

      Appendix A. Supplementary data

      The following is the Supplementary data to this article:

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